PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa005782
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family MYB_related
Protein Properties Length: 136aa    MW: 15091.8 Da    PI: 4.6531
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58656701PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.15.6e-152669247
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     g  ++eE++l+++++ +lG++ W++Ia +++ gRt++++k++w++ 
        Lsa005782 26 GGISPEEEDLILRLHCLLGNR-WALIAGRIP-GRTDNEIKNYWNTN 69
                     5569*****************.*********.***********986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.8E-211975IPR009057Homeodomain-like
PROSITE profilePS5129421.9552074IPR017930Myb domain
SuperFamilySSF466894.41E-132080IPR009057Homeodomain-like
SMARTSM007174.0E-132472IPR001005SANT/Myb domain
PfamPF002496.9E-142670IPR001005SANT/Myb domain
CDDcd001672.46E-112970No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 136 aa     Download sequence    Send to blast
EGGAPAVWEE LPPPVDELPS PSVKRGGISP EEEDLILRLH CLLGNRWALI AGRIPGRTDN  60
EIKNYWNTNL SKKLISQGID PRTHKPLSSS SSNPNYQNFV HLSCSMEQPE VGLPNSNEII  120
SNPNSNKDEN KEDEIL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011025148.13e-38PREDICTED: transcription repressor MYB5-like
SwissprotQ388501e-35MYB5_ARATH; Transcription repressor MYB5
TrEMBLA5A3672e-38A5A367_9CARY; Myb-like protein P
STRINGPOPTR_0003s21120.14e-37(Populus trichocarpa)